Selected Publications:

	Modeling of Front Evolution with Graph Cut Optimization IEEE Int. Conference on Image Processing, 2007
	A Correlation with Exon Expression Approach to Identify cis-regulatory Elements for Tissue-specific Alternative Splicing Nucleic Acids Research, 2007
	Segmentation of Heterogeneous Blob Objects through Voting and Level Set Formulation Pattern Recognition Letters, 2007
	Perceptual Grouping of Membrane Signals in Cell-based Assays IEEE Int. Symp. on Biomedical Imaging, 2007
	Predictive Models of Gene Regulation: Application of Regression Methods to Microarray Data Methods in Molecular Biology, 2007
	Quantitative Representation of Three-Dimensional Cell Culture Models IEEE Int. Symp. on Biomedical Imaging, 2007
	Segmentation of Mammosphere Structures from Volumetric Data IEEE Int. Symp. on Biomedical Imaging, 2007
	Spectral Decomposition of Signaling Networks IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology 2007
	Interative Voting for Inference of Structural Saliency and Characteriztion of Subcellular Events IEEE Transactions on Image Processing, March 2007
	3D Segmentation of Mammospheres for Localization Studies Int. Symp. on Visual Computing, 2006
	Adaptively Inferring Human Transcriptional Subnetworks Molecular Systems Biology (Nature/EMBO), 2006
	Mining ChIP-chip Data for Transcription Factor and Cofactor Binding Sites Intelligent Systems for Molecular Biology (ISMB), 2005
	Geometric approach to segmentation and protein localization in cell cultured assays Int. Symp. on Visual Computing, 2005
	Advances in Visual Computing (Edited) Springer, 2005
	Integrated Imaging Informatics--Computational Systems Biology (Edited) Elsevier, 2005
	Localization of Symmetries through Iterative Voting Int. Conference on Pattern Recognition, 2004
	Shape Metamorphism using infinite Laplacian Equation Int. Conference on Pattern Recognition, 2004
	Perceptual Organization of Radial Symmetries IEEE Conf. on Computer Vision and Pattern Recognition, 2004
	BioSig: An Imaging Bioinformatics System for Phenotypic Studies IEEE Transactions on Systems, Man, Cybernetics, Oct. 2003
	High-Resolution Reconstruction of Sparse Data from Dense Low-Resolution Spatio-Temporal Data IEEE Transactions on Image Processing, April 2003
	Web Intelligence: Web-based BISC Decision Support System Computational Web Intelligence: Intelligent Technology for Web Applications--Book Chapter, 2003.
	Harmonic Cut and Regularized Centroid Transform for Localization of Subceullar Structure IEEE Transactions on Biomedical Engineeing, April 2003
	BioSig: An Imaging and Informatic Framework for Representing the Physiological Responses of Living Cells Biosilico, March 2003
	BioSig: An Imaging and Informatic System for Studying Phenomics IEEE Computers, July 2002.
	Harmonic Cut and Regularized Centroid Transform for Localization of Subceullar Structure International Conference on Pattern Recognition, Aug. 2002.
	CHEF:Convex Hull of Elliptic Features for 3D Blob Detection International Conference on Pattern Recognition, Aug. 2002.
	Robust and Efficient Surface Reconstruction from Contours, Visual Computers, May 2001.
	Detection of Vortices and Saddle Points in SST Data ,  Journal of Geophysical Research Letters, January 2001.
	BioSig: A Bioinformatic System for Studying the Mechanism of Inter-cell Signaling,  IEEE Int. Symp. on Bioinformatic and BiomedicalEngineering, Nov. 2000
	Feature Based Visualization of Geophysical Data, IEEE Conf. on Computer Vision and Pattern Recognition, 2000.
	Shape Recovery from Equal Thickness Contours, IEEE Transactions on Pattern Analysis and Machine Intelligence, Aug. 2000.
	A New Regularized Approach for Contour Morphing,  IEEE Conf. on Computer Vision and Pattern Recognition, 2000.
	An Algebraic Solution to Surface Recovery from Cross-sectional Contours ,  Journal of Graphical Models and Image Processing, July 1999.
	DeepView: A Channel for Distributed Microscopy and Informatics ,  IEEE Conf. on High Performance Computing and Networking , Nov. 1999.
	Model Based Segmentation of Nuclei ,  IEEE Conference on Computer Vision and Pattern Recognition, , June 1999. Journal of Pattern Recognition, 2000
	Surface Reconstruction from Sparse Fringe Contours ,  IEEE Workshop on Applications of Computer Vision , Oct. 1998.
	Shape from Interfernce Patterns ,  Int. Conf. on Pattern Recognition , Aug. 1998.
	Shape from Equal Thickness Contours ,  IEEE Conf. on Computer Vision and Pattern Recognition , June 1998.  IEEE Trans. on Pattern Analysis and Machine Intelligence, 2000.
	Active Calibration and Tracking in Video Streams ,  LBNL Internal Report , Feb. 1998.
	Visual Servoing for Online Facilities ,  IEEE Computer , July 1997.
	Visual Servoing for Micro Manipulation ,  International Conference on Pattern Recognition, August. 1996.
	Telepresence for In-situ Microscopy ,  IEEE International Conference on Multimedia Systems and Computers, June. 1996.
	Invariant Representation and Hierarchical Classification of Fruits from X-ray Images,  Int. Journal of Imaging System, 1996.
	Invariant Representation and Hierarchical Network for Inspection of Nuts from X-ray Images,  IEEE Int. Conference on Neural Networks, Nov. 1995.
	Tracking of Convex Objects,  IEEE Int. Syposium on Computer Vision, Nov. 1995.
	Tracking of Tubular Molecules for Scientific Applications ,  IEEE Transaction on Pattern Analysis and Machine Intelligence, Aug. 1995.
	Tracking of Tubular Objects for Scientific Applications,  IEEE Conf. on Computer Vision and Pattern Recognition, June 1994.
	Visualization of Volumetric Structures from MR Images of the Brain,  AAAI Symp. on Application of Computer Vision to Medical Imaging, March 1994.
	Pinta: A system for Visualizing Anatomical Structures of the Brain from MR Images ,  IEEE Conference on Computer Vision and Pattern Recognition, June 1993.